This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window.
| Data Category | Organism | Data | Source | PubMed | Note |
|---|---|---|---|---|---|
|
Genes |
Drosophila | Genome annotation for D. melanogaster (R5.34), D. ananassae (R1.3), D. erecta (R1.3), D. grimshawi (R1.3), D. mojavensis (R1.3), D. persimilis (R1.3), D. pseudoobscura (R2.17), D. sechellia (R1.3), D. simulans (R1.3), D. virilis (R1.2), D. willistoni (R1.3) and D. yakuba (R1.3). | Flybase - Version FB2011_10 | Crosby et al - PubMed: 17099233 | #1 |
| A. gambiae | Genome annotation - Release AgamP3.5 | Ensembl - Release 60.3l | Hubbard et al - PubMed: 17148474 | ||
| A. gambiae | EST data set | anoEST database - Version 8 | Kriventseva et al - PubMed: 15899967 | ||
Homology |
Drosophila | Orthologues and paralogues between the 12 Drosophila genomes. | Flybase - Version FB2011_10 | Crosby et al - PubMed: 17099233 | |
|
D. melanogaster D. rerio C. elegans M. musculus R. norvegicus H. sapiens A. gambiae S. cerevisiae |
Orthologue and paralogue relationships between these 8 organisms | Treefam - release 7.0 | Ruan et al - PubMed: 18056084 | ||
|
D. melanogaster H. sapiens |
Orthologue and paralogue relationships between human and Drosophila melanogaster | Ensembl Compara | |||
Proteins |
D. melanogaster A. gambiae C. elegans H. sapiens M. musculus |
Protein annotation | UniProt - Release 2011_11 | UniProt Consortium - PubMed: 17142230 | |
|
D. melanogaster A. gambiae C. elegans |
Protein family and domain assignments to proteins | InterPro (from UniProt Release 2011_11) | Mulder et al - PubMed: 17202162 | ||
| D. melanogaster | Experimentally determined 3-D structures | PDB [Protein Data Bank] - 18 Oct 2011 | |||
Interactions |
D. melanogaster C. elegans S. cerevisiae |
High-throughput yeast 2-hybrid protein interaction datasets | IntAct - 24 Nov 2011 | Kerrien et al - PubMed:17145710 | |
|
D. melanogaster D. rerio C. elegans M. musculus R. norvegicus H. sapiens A. gambiae S. cerevisiae |
Interactions from the BioGRID | BioGRID - Version 3.1.82 | Stark et al - PubMed:16381927 | ||
| D. melanogaster | miRNA target predictions from miRBase | miRBase - Version 5 | Enright et al - PubMed:14709173 | ||
Gene Ontology |
D. melanogaster | GO annotations | Gene Ontology Site - 23 Nov 2011 | Gene Ontology Consortium - PubMed:10802651 | |
| C. elegans | GO annotations | Gene Ontology Site - 26 Nov 2011 | Gene Ontology Consortium - PubMed:10802651 | ||
| A. gambiae | GO annotations | UniProt GOA - 14 Nov 2011 | Camon et al - PubMed: 14681408 | ||
| D. melanogaster, A. gambiae, C. elegans | InterPro domains to GO annotations | InterPro (from Gene Ontology Site) - 29 Nov 2011 | Gene Ontology Consortium - PubMed:10802651, Mulder et al - PubMed: 17202162 | ||
Expression |
D. melanogaster | Microarray-based gene expression data for the life cycle of D. melanogaster | ArrayExpress - Experiment E-FLYC-6 | Arbeitman et al - PubMed: 12351791 | |
| D. melanogaster | Affymetrix microarray-based atlas of gene expression in larval and adult tissues | FlyAtlas - 25th April 2010 | Chintapalli et al - PubMed: 17534367 | ||
| D. melanogaster | Expression patterns of mRNAs at the subcellular level during early embryogenesis | Fly-FISH - 16th October 2007 | Lecuyer et al - PubMed: 17923096 | ||
| D. melanogaster | Expression patterns of mRNAs during embryogenesis | BDGP - 9th May 2008 | Tomancak et al - PubMed:17645804 | ||
| A. gambiae | Microarray-based gene expression data for the life cycle of A. gambiae | ArrayExpress - Experiment E-TABM-186 | Koutsos et al - PubMed: 17563388 | ||
Regulation |
D. melanogaster | Transcriptional cis-regulatory modules (CRMs) | REDfly - 21 October 2010 | Gallo et al - PubMed: 16303794 | |
| D. melanogaster | Transcription factor binding sites | REDfly - 21 October 2010 | Bergman et al - PubMed: 15572468 | ||
| D. melanogaster | Enhancers | FlyBase - Version FB2011_10 | Crosby et al - PubMed: 17099233 | ||
Phenotypes |
D. melanogaster | Alleles and phenotypes | FlyBase - Version FB2011_10 | Crosby et al - PubMed: 17099233 | |
| D. melanogaster | High-throughput cell-based RNAi screens | Drosophila RNAi Screening Center - 29 Nov 2011 | Flockhart et al - PubMed: 16381918 | ||
Pathways |
D. melanogaster C. elegans |
Curated pathway information and the genes involved in them | KEGG - Release 58, 31 May 2011 | Kanehisa et al - PubMed: 16381885 | |
| D. melanogaster C. elegans |
Pathway information and the genes involved in them, inferred through orthologues from Human curated pathways | Reactome - 28 Oct 2011 | |||
| D. melanogaster | Curated pathway information and the genes involved in them | FlyReactome - Version 2.0 | |||
Diseases |
D. melanogaster | Human disease data set | OMIM | Amberger et al - PubMed: 18842627 | |
Resources |
D. melanogaster | DrosDel artificial deletions | FlyBase - Version FB2011_10 | Ryder et al - PubMed: 15238529 | |
| D. melanogaster | Insertions (including DrosDel and Exelixis) | Flybase - Version FB2011_10 | Crosby et al - PubMed: 17099233 | ||
| D. melanogaster | Probe sets from the Affymetrix GeneChip Drosophila Genome 1.0 Array | Ensembl - Release 50 | |||
| D. melanogaster | Probe sets from the Affymetrix GeneChip Drosophila Genome 2.0 Array | Ensembl - Release 50 | |||
| D. melanogaster | INDAC Microarray oligo set - Version 1.0 | International Drosophila Array Consortium | |||
Publications |
Drosophila | Gene versus publications | Flybase - Version FB2011_10 | Crosby et al - PubMed: 17099233 | |
|
D. melanogaster C. elegans S. cerevisiae |
Gene versus publications | NCBI - 29 Nov 2011 |
