FlyMine

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Enter an identifier or synonym (e.g. 'zen', 'Q9V4E1')

Show all names and identifiers for a particular database entry.  Show all the genes for a particular organism.  Output genes from a particular organism in a format suitable for creating a fasta database.  Show the predicted transcripts and the number of exons for a particular gene.  Show the predicted transcripts and exons for a particular gene.  Show the proteins for a particular gene.  Show genes located on a particular chromsome.  Show the chromosome and the chromosome location of a particluar gene.  Show the chromosome location of the exons for a particular gene.  Show the chromosome location and sequence for all genes from a particular organism.  Show the genes, transcripts and exons located between two points on a chromosome. Give the location of the exons.  Search for GO annotations for a particular gene.  Search for genes annotated with a particular GO term.  Show predicted orthologues between two organisms and their GO terms.  Search for predicted orthologues for a particular gene:  Show the predicted orthologues between two organisms.  Show the transcript identifiers for a particular gene and its predicted orthologues transcript identifiers.  Search for genes with a particular RNAi phenotype and show the orthologues of these genes. (Note: RNAi phenotypes are currently only available for C. elegans).  Search for RNAi phenotypes for a particular gene and show the predicted orthologues for this gene. (Note: RNAi phenotypes are currently only available for C. elegans genes).  Search for genes with a particular RNAi phenotype. (Note: RNAi phenotypes are currently only available for C. elegans).  Search for RNAi phenotypes for a particular gene. (Note RNAi phenotypes are currently ony available for C. elegans).  Search for the C. elegans orthologue for a particular gene and its RNAi phenotype.  Show the C. elegans orthologue and RNAi phenotypes for all genes from a particular organism.  Show transcription factor binding sites for a particular gene.  Find an entry in the database using any identifier or synonym.  Give details of the INDAC microarray long oligo for a particular transcript. 

Show all the proteins from a particular organism.  Output proteins from a particular organism in a format suitable for creating a fasta database.  Show protein interactions for a particular protein.  Show protein interactions for proteins annotated with a particular GO identifier in a particular organism.  For the protein product of a particular gene, show the proteins it has been shown to interact with, the confidence value assigned to this interaction, the interaction detection method and the publication for the experiment performed.  For the protein product of a particular gene, show any proteins it has been shown to interact with and for these proteins any regions which have a Pfam domain with a predicted 3-D structure.  For a particular Drosophila gene show any regions of it's protein for which there is a predicted 3-D structure.  Search for Drosophila proteins which contain a particular Pfam domain for which there is also a predicted 3-D structure.  Search for genes whose proteins have regions for which there is a predicted 3-D structure. Give the location of the region on the protein and the structure details.