Templates

Templates are predefined queries, each has a simple form and a description. Click on a template to run it, you can search for templates by keyword and filter them by category.
  • Search: 
  •    Filter: 
  •   
Actions: 
You are not logged in. Log in to mark items as favourites .
 
All genes in organism --> All chromosomal locations.

Show the chromosomal location and sequence for all genes from a particular organism.

 
All genes in organism --> C. elegans orthologues + RNAi phenotypes of these orthologues.

Show the C. elegans orthologue and RNAi phenotypes for all genes from a particular organism.

 
All genes in organism --> Publications.
Show the publications for each gene in an organism. Data currently available for C.elegans, D.melano...  more
 
All genes organism1 --> Orthologues organism2.

Show the predicted orthologues between two organisms.

 
All pairs of interacting proteins in organism1 --> All pairs of interacting proteins in organism2.
Search for "interologues" (interologs): protein interactions conserved in different species. NOTE: O...  more
 
All pairs of interacting proteins in organism1 --> Orthologues in organism2.
For the protein interactions of a particular organism, show all pairs of interacting proteins and th...  more
 
Amplicon [D. melanogaster] --> RNAi screen results.
Find results from the Drosophila RNAi Screening Center for a particular amplicon. Both DRSC or HFA a...  more
 
Anatomy term [D. melanogaster] --> CRMs.
Show all the Cis-Regulatory Regions that have been associated with a specific anatomy ontology term,...  more
 
Chromosomal location --> All genes, transcripts, exons.
Show the genes, transcripts and exons located between two points on a chromosome. Give the location...  more
 
Chromosomal location --> All genes.

Show the genes located between two points on a chromosome

 
Chromosomal location --> Genes, transcripts, INDAC long oligos.

Show the genes, transcripts and INDAC oligos located in a particular chromosome location.

 
Chromosomal location --> Predicted binding sites (according to the Tiffin data).
For a particular chromsome location show all the (computationally) predicted binding sites according...  more
 
Chromosomal location [A. gambiae] --> EST cluster.
For a particular chromosome location show all the EST clusters. (Data available for Anopheles gambia...  more
 
Chromosomal location [A. gambiae] --> EST clusters + ESTs.
For a particular chromosomal location show all EST clusters and ESTs (data available for A. gambiae ...  more
 
Chromosomal location [D. melanogaster] --> All DrosDel deletions.

Show DrosDel deletions for a particular chromosomal location.

 
Chromosomal location [D. melanogaster] --> CRMs + chromosomal locations and lengths of these regions.
For a specific chromosomal location of D. melanogaster, show all Cis-regulatory modules from REDfly ...  more
 
Chromosomal location [D. melanogaster] --> Regulatory regions + TF binding sites overlapping these regions.
For a specific chromosomal location of D. melanogaster, show all regulatory regions and the TF bindi...  more
 
Chromosomal location [D. melanogaster] --> TF binding sites + chromosomal locations, genes and transcription factors.
For a particular D. melanogaster chromosomal location, show all REDfly transcription factor binding ...  more
 
Chromosomal location [D. melanogaster] --> Tiling path amplimers + primers located in promoters.
Show microarray tiling path amplimers and the primers used to create them that are located between t...  more
 
Chromosomal location [D. melanogaster] --> Tiling path amplimers + primers.
Show microarray tiling path amplimers and the primers used to create them that are located between t...  more
 
Chromosome --> All genes.

Show genes located on a particular chromosome.

 
Chromosome --> All intergenic regions + start, end and length of intergenic regions.

For a particular chromosome show start, end and length of all intergenic regions.

 
Chromosome [D. melanogaster] --> All genes with P-element insertions + chromosomal location of genes and P-element insertions.
For a particular chromosome, show genes that have an overlapping P-element insertion. Show the coor...  more
 
Chromosome [D. melanogaster] --> All regulatory regions + P-element insertion sites overlapping these regions.
For a specific chromosome from D. melanogaster, show all regulatory regions and P-element insertion ...  more
 
Chromosome [D. melanogaster] --> Tiling path amplimers + chromosomal locations of these amplimers.

Show microarray tiling path amplicons and their location for a particular chromosome.

 
Dataset --> All pairs of protein interactions.

Show all protein interactions from a particular dataset.

 
Dataset [Giot et al] --> high confidence protein interactions (or filter on confidence value).
Show the set of high-confidence interactions from the Giot et al dataset (or filter this dataset on ...  more
 
Disease [Human] --> Genes + D. melanogaster homologues (filter on blast E-Value).
For a given human disease, show all human genes that have been annotated with it, and the homologous...  more
 
Disease [Human] --> Genes + D. melanogaster homologues.
For a given human disease, show all human genes that have been annotated with it, and the homologous...  more
 
DrosDel deletion [D. melanogaster] --> Chromosomal location + genes + transcripts + overlapping INDAC oligos.
Show chromosomal location, overlapping genes, transcripts and INDAC oligos for a specific DrosDel de...  more
 
DrosDel deletion [D. melanogaster] --> Genes + chromosomal location of DrosDel deletion and genes.
For a specific DrosDel deletion, report chromosome, deletion identifier and coordinates together wit...  more
 
EST accession [A. gambiae] --> EST clusters + chromosomal locations.
For a particular EST accession show the clusters it belongs to and the chromosomal locations (data a...  more
 
EST clone --> Chromosome location + Gene (A. gambiae only).
For a particular EST clone show the chromosome location of the cluster to which it belongs and the g...  more
 
EST clone [A. gambiae] --> Chromosomal location + Gene + D. melanogaster orthologue + KEGG pathway.
For a particular A. gambiae EST clone, show its chromosomal location, the corresponding A. gambiae g...  more
 
EST clone [A. gambiae] --> Chromosomal location + Gene + Orthologue.
For a particular A. gambiae EST clone show the chromosomal location of the EST cluster it belongs to...  more
 
EST clone [A. gambiae] --> Chromosomal location + Gene + Protein structure.
For a particular EST clone from A. gambiae show the corresponding gene and the structure for the pro...  more
 
EST clone [A. gambiae] --> EST clusters + chromosomal locations.
For a particular EST clone show the clusters it belongs to and the chromosomal locations (data avail...  more
 
EST cluster [A. gambiae] --> Chromosomal location.
For a particular EST cluster show its ESTs and the chromosomal location of the cluster (data availab...  more
 
EST cluster [A. gambiae] --> Overlapping Gene + D. melanogaster orthologue + KEGG Pathway.
For a particular A. gambiae EST cluster or cluster type, show the overlapping gene, the D. melanogas...  more
 
EST cluster type [A. gambiae] --> All unaligned EST clusters.

Show all A. gambiae clusters which have no match to the genome.

 
EST cluster type [A. gambiae] --> Chromosomal location.
Show the chromosomal location of all Anopheles gambiae EST clusters and ESTs of a particular type. ...  more
 
Experimental method -> D. melanogaster 3-D protein structures (PDB).
Show all 3-D protein structures that have been determined using a certain experimental method (datas...  more
 
FlyFish data -> Genes (filter on stage and localisation term).
Show all Drosophila melanogaster genes whose mRNAs are linked to a specific localisation term at a s...  more
 
GO term identifier --> GO term name

Give the GO term name for a particular GO term identifier.

 
GO term name -> GO term identifier

Find the GO identifier for a specific term.

 
GO term name/id --> Genes in one specific organism.

Search for genes in one specific organism that have been asociated with a particular GO annotation.

 
Gene --> Adjacent genes (upstream and downstream).

For a particular gene, find the upstream and the downstream adjacent genes.

 
Gene --> C. elegans orthologue + RNAi phenotype of the orthologue.

For a particular gene, search for the C. elegans orthologue and its RNAi phenotype.

 
Gene --> Chromosomal location.

Show the chromosome and the chromosome location of a particular gene.

 
Gene --> Exons + chromosomal locations and lengths.

For a specific gene, show its exons and their chromosomal locations and lengths.

 
Gene --> GO terms and parents of those terms
Given a gene show the associated GO terms, and the all parents to the top of the directed graph. If...  more