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Interactions

External links:
Protein-protein interactions from IntAct (PSI-MI format), genetic interactions from the BioGRID and miRNA target predictions from miRBase.
Current data

Interactions datasets ...

  • Protein interactions have been loaded for D. melanogaster, C. elegans and S. cerevisiae from IntAct.
  • Genetic and protein interaction data for D. melanogaster, C. elegans and S. cerevisiae have been loaded from the BioGRID. These data include both high-throughput studies and conventional focused studies and have been curated from the literature.

D. melanogaster miRNA targets ...

  • miRNA target predictions for D. melanogaster miRNAs from miRBase. The miRanda algorithm was used to scan all available miRNA sequences for a given genome against 3' UTR sequences of that genome. Each predicted target has a score and a p-value. The algorithm and its results have been published: Enright et al - PubMed:14709173.
Bulk download
Related template queries

Gene + Pathway --> Interactions

Gene --> Interactions

Protein --> Interactions

Gene A --> Interaction <-- Gene B

Query starting points

These links will take you to the Query Builder pages which allow you to make new queries and create template queries of your own





Funding: InterMine has been developed principally through support of the Wellcome Trust. Complementary projects have been funded by the NIH/NHGRI and the BBSRC.

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Cambridge CB2 3EH, United Kingdom