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PL FlyTF_putativeTFs
757
Genes
A list of putative TFs, based on the presence of a putative DNA-binding domain (including C2H2 zinc fingers) and/or experimental evidence. Since creation of this list the following genes were split as follows and so may need further verification: FBgn0053936 -> CG43674 and CG43675; FBgn0053520 -> CG43662 and CG43663; FBgn0051782 -> CR43670, CR43671 and CR43669; FBgn0051169 -> CG43342 and CG43343; FBgn0051392 -> CG42726 and CG42727. This data comes from www.flyTF.org, the drosophila transcription factor database version 2. 7th september 2015: A further gene has been split: FBgn0262707 has split into FBgn0266441 and FBgn0266452 - only FBgn0266441 was added to the list as this appears to be a transcription factor. Release 44: FBgn0050420 has been split into two genes: FBgn0265193 (Atf-2) and FBgn0265182. Only FBgn0265193 (Atf-2) was added to the list as this has known transcription factor activity.
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PL FlyTF_trusted_TFs
293
Genes
A list of experimentally verified TFs, definitive DNA-binding factors and predicted TFs with a canonical DNA-binding domain (excluding C2H2 zinc fingers).
This data comes from www.flyTF.org, the drosophila transcription factor database version 2.
PL FlyTF_site_specific_TFs
171
Genes
Transcription factors with experimental evidence for both DNA-binding and transcriptional regulatory function. This data comes from www.flyTF.org, the drosophila transcription factor database version 2.
PL FlyTF_REDfly_TFs
79
Genes
TFs with REDfly regulatory information: TFs for which REDfly holds information about the regulatory regions these proteins bind to. This data comes from www.flyTF.org, the drosophila transcription factor database version 2.
PL FlyTF_PWM_TFs
129
Genes
TFs for which a PWM is available: Proteins for which a position weight matrix is available (Transfac, Dan Pollard's web site) or can easily be created (Noyes et al.: Homeobox specificities). This data comes from www.flyTF.org, the drosophila transcription factor database version 2.
PL dme_immunity_genes
367
Genes
D. melanogaster genes potentially involved in responses to microbial infection (Data Source: http://lemaitrelab.epfl.ch/Jahia/site/lemaitrelab/op/edit/pid/27282).
PL classIIIc
184
Genes
class III (activated) genes whose transcripts increase at 22 hours of development (Source: Hooper et al 2007 - PubMed: 17224916).
PL classIIIb
339
Genes
class III (activated) genes whose transcripts increase at 18-20 hours of development (Source: Hooper et al 2007 - PubMed: 17224916). Note: Nov 2018. Gene FBgn0020439 has been split into CG45076 FBgn0266446, and CG45078, FBgn0266448 and CG45077, FBgn0266451. All three genes have been added to the list.
PL classIIIa
255
Genes
class III (activated) genes whose transcripts increase at 13-14 hours of development (Source:Hooper et al 2007).
PL classIIc
49
Genes
class II (transient) genes whose transcripts increase around 15 hours and decrease around 20 hours of development (Source: Hooper et al 2007).
PL classIIb
99
Genes
class II (transient) genes whose transcripts increase around 11 hours and decrase around 20 hours of development (Source: Hooper et al 2007 - PubMed: 17224916).
PL classIIa
152
Genes
class II (transient) genes whose transcripts increase around 2,5 hours and decrease around 12 hours of development (Source: Hooper et al 2007 - PubMed: 17224916). Note: the following gene has been split since creation of this list and so may need further verification: FBgn0003600 -> CG43664 and CG43665.
PL classIb
596
Genes
class I (maternal) genes whose transcript levels decrease at 12-14 hours of development (Source: Hooper et al 2007 - PubMed: 17224916). NOTE: Since creation of this list FBgn0085435 has been split into FBgn0264744 and FBgn0264745. These may require further verification. Note: Nov 2018: FBgn0038111 has been split into CG46281, FBgn0283439 and CG46280, FBgn0283438. Both genes have been added to the list.
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PL classIa
365
Genes
class I (maternal) genes whose transcript levels decrease at 3-5 hours (Source: Hooper et al 2007 - PubMed: 17224916).
PL classIII
1042
Genes
Activated genes - genes encoding transcripts that only show an increase in expression during embryogenesis (Source: Hooper et al 2007 - PubMed: 17224916). Note: Nov 2018: Gene FBgn0020439 has been split into CG45076, FBgn0266446 and CG45078, FBgn0266448 and CG45077, FBgn0266451. All three genes have been added to the list.
PL classII
772
Genes
Transient genes - genes encoding transcripts levels that first increase and later decrease during embryogenesis, and thus do not seem to be maternally deposited (Source: Hooper et al 2007 - PubMed: 17224916). Note: the following genes have been split since creation of this list and so may need further verification: FBgn0003600 -> CG43664 and CG43665; FBgn0053520 -> CG43662 and CG43663. Note: Nov 2018: FBgn0015541 has been split into CG14509 ,FBgn0039647 and CG46339, FBgn0285963. Both genes have been added to the list.
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PL classI
1514
Genes
Maternal genes - genes encoding transcripts that start with a high relative transcript level, which subsequently decreases during embryogenesis (Source: Hooper et al 2007 - PubMed: 17224916). Note gene FBgn0003600 was split into CG43664 and CG43665, and FBgn0085435 into FBgn0264744 and FBgn0264745, and FBgn0051232 into FBgn0264816 and FBgn0264751 after creation of this list: these may require further verification - all the split genes have been retained in the list. Note Nov 2018: FBgn0038111 has been split into CG46281 FBgn0283439 and CG46280 FBgn0283438 - these have both been added to the list.
PL FlyAtlas_tubules_top
43
Genes
List of the most enriched genes in the adult fly tubules (Source: www.flyatlas.org)
PL FlyAtlas_brain_top
37
Genes
List of the most enriched genes in the adult fly brain (Source: www.flyatlas.org)
PL FlyAtlas_head_top
49
Genes
List of the most enriched genes in the adult fly head (Source: www.flyatlas.org)
PL FlyAtlas_hindgut_top
39
Genes
List of the most enriched genes in the adult fly hindgut (Source: www.flyatlas.org)
PL FlyAtlas_maleglands_top
47
Genes
List of the most enriched genes in the adult fly male accessory glands (Source: www.flyatlas.org)
PL FlyAtlas_ovary_top
45
Genes
List of the most enriched genes in the fly ovary (Source: www.flyatlas.org). Note: the following gene has been split since creation of this list and so may need further verification: FBgn0051782 -> CR43670, CR43671 and CR43669.
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