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| Interface Summary | |
|---|---|
| DataSetLdr | An Interface which defines a frame in which data can be retrieved, organised and created to then be passed to a JFreeChart for representation |
| ErrorCorrection | |
| GraphCategoryURLGenerator | Methods used to construct the links used on the graph widgets |
| GridDataSetLdr | An Interface which defines a frame in which data can be retrieved, organised and created to then be passed to a gridWidget for representation |
| WidgetHelper | An Interface for widget Utils |
| WidgetURLQuery | Builds a pathquery based on a widget. |
| Class Summary | |
|---|---|
| BenjaminiHochberg | This correction is the less stringent than the Bonferroni, and therefore tolerates more false positives. |
| Bonferroni | See online documentation for an in depth description of error correction and bonferroni. |
| EnrichmentWidget | |
| EnrichmentWidgetLdr | Prepares the data and queries for the enrichment widget controller to process. |
| GraphWidget | |
| GridDataSet | GridDataSet contains Data for gridWidget |
| GridWidget | |
| HTMLWidget | |
| Hypergeometric | Calculates p-values for go terms using the hypergeometric distribution. |
| TableWidget | |
| TableWidgetLdr | |
| ToolTipGenerator | |
| Widget | |
| WidgetUtil | Helper class for widgets. |
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