org.intermine.web.logic.widget
Class EnrichmentWidget

java.lang.Object
  org.intermine.web.logic.widget.Widget
      org.intermine.web.logic.widget.EnrichmentWidget

public class EnrichmentWidget
extends Widget

Field Summary

Fields inherited from class org.intermine.web.logic.widget.Widget

config

Constructor Summary

EnrichmentWidget(EnrichmentWidgetConfig config, InterMineBag interMineBag, ObjectStore os, java.lang.String filter, java.lang.String max, java.lang.String errorCorrection)

Method Summary

java.util.List<java.lang.String>	getColumns()
java.util.List	getElementInList() checks if elem is in bag
java.util.List<java.util.List<java.lang.String>>	getExportResults(java.lang.String[] selected)
java.util.List<java.util.List<java.lang.String[]>>	getFlattenedResults()
boolean	getHasResults()
int	getNotAnalysed()
void	process() Process the data and create the widget
void	setNotAnalysed(int notAnalysed)

Methods inherited from class org.intermine.web.logic.widget.Widget

getConfigId, getTitle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EnrichmentWidget

public EnrichmentWidget(EnrichmentWidgetConfig config,
                        InterMineBag interMineBag,
                        ObjectStore os,
                        java.lang.String filter,
                        java.lang.String max,
                        java.lang.String errorCorrection)

Parameters:

config - widget config

interMineBag - bag for this widget

os - object store

errorCorrection - which error correction to use (Bonferroni, etc)

max - maximum value to display (0 - 1)

filter - filter to use (ie Ontology)

Method Detail

process

public void process()

Process the data and create the widget

Specified by:

process in class Widget

getElementInList

public java.util.List getElementInList()

checks if elem is in bag

Specified by:

getElementInList in class Widget

Returns:

true if elem is in bag

getNotAnalysed

public int getNotAnalysed()

Specified by:

getNotAnalysed in class Widget

Returns:

the number of objects not analysed in this widget

setNotAnalysed

public void setNotAnalysed(int notAnalysed)

Specified by:

setNotAnalysed in class Widget

Parameters:

notAnalysed - the number of objects not analysed in this widget

getHasResults

public boolean getHasResults()

Specified by:

getHasResults in class Widget

Returns:

the hasResults

getExportResults

public java.util.List<java.util.List<java.lang.String>> getExportResults(java.lang.String[] selected)
                                                                  throws java.lang.Exception

Specified by:

getExportResults in class Widget

Parameters:

selected - the list of checked items from the form

Returns:

the checked items in export format

Throws:

java.lang.Exception - something has gone wrong. oh no.

getFlattenedResults

public java.util.List<java.util.List<java.lang.String[]>> getFlattenedResults()

Specified by:

getFlattenedResults in class Widget

Returns:

results of widget

getColumns

public java.util.List<java.lang.String> getColumns()

Returns:

List of column labels