org.intermine.bio.postprocess
Class PostProcessOperationsTask

java.lang.Object
  org.apache.tools.ant.ProjectComponent
      org.apache.tools.ant.Task
          org.intermine.task.DynamicAttributeTask
              org.intermine.bio.postprocess.PostProcessOperationsTask

public class PostProcessOperationsTask
extends DynamicAttributeTask

Run operations on genomic model database after DataLoading

Field Summary

protected java.lang.String	ensemblDb
protected java.lang.String	objectStoreWriter
protected java.lang.String	operation
protected java.lang.String	organisms
protected ObjectStoreWriter	osw
protected java.io.File	outputFile

Fields inherited from class org.intermine.task.DynamicAttributeTask

LOG

Fields inherited from class org.apache.tools.ant.Task

description, location, target, taskName, taskType, wrapper

Fields inherited from class org.apache.tools.ant.ProjectComponent

project

Constructor Summary

PostProcessOperationsTask()

Method Summary

void	execute()
void	setEnsemblDb(java.lang.String ensemblDb) Sets the value of ensemblDb
void	setObjectStoreWriter(java.lang.String objectStoreWriter) Sets the value of objectStoreWriter
void	setOperation(java.lang.String operation) Sets the value of operation
void	setOutputFile(java.io.File outputFile) Sets the value of outputFile

Methods inherited from class org.intermine.task.DynamicAttributeTask

configureDynamicAttributes

Methods inherited from class org.apache.tools.ant.Task

getDescription, getLocation, getOwningTarget, getRuntimeConfigurableWrapper, getTaskName, getTaskType, getWrapper, handleErrorFlush, handleErrorOutput, handleFlush, handleInput, handleOutput, init, isInvalid, log, log, maybeConfigure, perform, reconfigure, setDescription, setLocation, setOwningTarget, setRuntimeConfigurableWrapper, setTaskName, setTaskType

Methods inherited from class org.apache.tools.ant.ProjectComponent

getProject, setProject

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

operation

protected java.lang.String operation

objectStoreWriter

protected java.lang.String objectStoreWriter

ensemblDb

protected java.lang.String ensemblDb

organisms

protected java.lang.String organisms

outputFile

protected java.io.File outputFile

osw

protected ObjectStoreWriter osw

Constructor Detail

PostProcessOperationsTask

public PostProcessOperationsTask()

Method Detail

setOperation

public void setOperation(java.lang.String operation)

Sets the value of operation

Parameters:

operation - the operation to perform eg. 'Download publications'

setObjectStoreWriter

public void setObjectStoreWriter(java.lang.String objectStoreWriter)

Sets the value of objectStoreWriter

Parameters:

objectStoreWriter - an objectStoreWriter alias for operations that require one

setOutputFile

public void setOutputFile(java.io.File outputFile)

Sets the value of outputFile

Parameters:

outputFile - an output file for operations that require one

setEnsemblDb

public void setEnsemblDb(java.lang.String ensemblDb)

Sets the value of ensemblDb

Parameters:

ensemblDb - a database alias

execute

public void execute()

Overrides:

execute in class org.apache.tools.ant.Task