org.intermine.bio.postprocess
Class CreateFlankingRegions

java.lang.Object
  org.intermine.bio.postprocess.CreateFlankingRegions

public class CreateFlankingRegions
extends java.lang.Object

Create features to represent flanking regions of configurable distance either side of gene featues. These will be used in overlap queries.

Constructor Summary

CreateFlankingRegions(ObjectStoreWriter osw)
Create a new CreateFlankingRegions object that will operate on the given ObjectStoreWriter.

Method Summary

void	createFlankingFeatures() Iterate over genes in database and create flanking regions.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CreateFlankingRegions

public CreateFlankingRegions(ObjectStoreWriter osw)

Create a new CreateFlankingRegions object that will operate on the given ObjectStoreWriter.

Parameters:

osw - the ObjectStoreWriter to use when creating/changing objects

Method Detail

createFlankingFeatures

public void createFlankingFeatures()
                            throws ObjectStoreException

Iterate over genes in database and create flanking regions.

Throws:

ObjectStoreException - if there is an ObjectStore problem