org.intermine.bio.postprocess
Class CalculateLocations.SimpleLoc

java.lang.Object
  org.intermine.bio.postprocess.CalculateLocations.SimpleLoc

Enclosing class:

CalculateLocations

protected class CalculateLocations.SimpleLoc
extends java.lang.Object

Lightweight representation of a Location for easier manipulation and storing in maps.

Constructor Summary

CalculateLocations.SimpleLoc(int parentId, int childId, int start, int end, java.lang.String strand)
Construct with integer values

CalculateLocations.SimpleLoc(int parentId, int childId, org.intermine.model.bio.Location loc)
Construct with integer values for object and subject and a Location object

Method Summary

int	getChildId() Get childId value
int	getEnd() Get start value
int	getParentId() Get parentId value
int	getStart() Get start value
java.lang.String	getStrand() Get strand value
void	setEnd(int end) Set end value
void	setStart(int start) Set start value
void	setStrand(java.lang.String strand) Set strand value
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CalculateLocations.SimpleLoc

public CalculateLocations.SimpleLoc(int parentId,
                                    int childId,
                                    int start,
                                    int end,
                                    java.lang.String strand)

Construct with integer values

Parameters:

parentId - id of object

childId - id of subject

start - start value

end - end value

strand - strand value

CalculateLocations.SimpleLoc

public CalculateLocations.SimpleLoc(int parentId,
                                    int childId,
                                    org.intermine.model.bio.Location loc)

Construct with integer values for object and subject and a Location object

Parameters:

parentId - id of object

childId - id of subject

loc - description of location

Method Detail

getStart

public int getStart()

Get start value

Returns:

start value

setStart

public void setStart(int start)

Set start value

Parameters:

start - value

getParentId

public int getParentId()

Get parentId value

Returns:

parentId value

getChildId

public int getChildId()

Get childId value

Returns:

childId value

getEnd

public int getEnd()

Get start value

Returns:

start value

setEnd

public void setEnd(int end)

Set end value

Parameters:

end - value

getStrand

public java.lang.String getStrand()

Get strand value

Returns:

strand value

setStrand

public void setStrand(java.lang.String strand)

Set strand value

Parameters:

strand - value

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

Returns:

String representation of location object

See Also:

Object.toString()