org.intermine.bio.postprocess
Class BiosegIndexTask

java.lang.Object
  org.intermine.bio.postprocess.BiosegIndexTask

public class BiosegIndexTask
extends java.lang.Object

A task to create a bioseg GIST index on the location table to help with overlap queries.

Field Summary

protected ObjectStoreWriterInterMineImpl

osw

Constructor Summary

BiosegIndexTask(ObjectStoreWriter osw)
Construct a new BiosegIndexTask that will change the given object store.

Method Summary

void	createIndex() Create a bioseg index on the location table.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

osw

protected ObjectStoreWriterInterMineImpl osw

Constructor Detail

BiosegIndexTask

public BiosegIndexTask(ObjectStoreWriter osw)

Construct a new BiosegIndexTask that will change the given object store.

Parameters:

osw - an ObjectStore to write to

Method Detail

createIndex

public void createIndex()
                 throws java.sql.SQLException

Create a bioseg index on the location table.

Throws:

java.sql.SQLException - if there is a problem dropping the tabe or creating the view