org.intermine.bio.chado
Class ChadoCV

java.lang.Object
  org.intermine.bio.chado.ChadoCV

public class ChadoCV
extends java.lang.Object

Objects of this class represent a controlled vocabulary from chado.

Constructor Summary

ChadoCV(java.lang.String cvName)
Create a new ChadoCV.

Method Summary

void	addByChadoId(java.lang.Integer cvtermId, ChadoCVTerm chadoCvTerm) Add a cvterm and its chado id to this cv.
java.util.Set<ChadoCVTerm>	getAllCVTerms() Return a Set of all the CVTerms in this CV.
ChadoCVTerm	getByChadoId(java.lang.Integer cvtermId) Return the ChadoCVTerm object for a given cvterm_id.
java.lang.String	getCvName() Return the cvName that was passed to the constructor.
java.util.Set<ChadoCVTerm>	getRootCVTerms() Return a Set of the root CVTerms in this CV - ie. those with no parents.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ChadoCV

public ChadoCV(java.lang.String cvName)

Create a new ChadoCV.

Parameters:

cvName - the name of the cv in chado that this object represents.

Method Detail

getCvName

public final java.lang.String getCvName()

Return the cvName that was passed to the constructor.

Returns:

the cv name

addByChadoId

public void addByChadoId(java.lang.Integer cvtermId,
                         ChadoCVTerm chadoCvTerm)

Add a cvterm and its chado id to this cv.

Parameters:

cvtermId - the chado id = cvterm.cvterm_id

chadoCvTerm - the ChadoCVTerm object

getByChadoId

public ChadoCVTerm getByChadoId(java.lang.Integer cvtermId)

Return the ChadoCVTerm object for a given cvterm_id.

Parameters:

cvtermId - the chado id = cvterm.cvterm_id

Returns:

the ChadoCVTerm

getRootCVTerms

public java.util.Set<ChadoCVTerm> getRootCVTerms()

Return a Set of the root CVTerms in this CV - ie. those with no parents.

Returns:

the cvterms

getAllCVTerms

public java.util.Set<ChadoCVTerm> getAllCVTerms()

Return a Set of all the CVTerms in this CV.

Returns:

the cvterms