org.intermine.api.bag
Class BagQuery

java.lang.Object
  org.intermine.api.bag.BagQuery

public class BagQuery
extends java.lang.Object

A class encapsulating a query used to create a bag from a collection of input identifiers.

Constructor Summary

BagQuery(BagQueryConfig bagQueryConfig, Model model, java.util.Map classKeys, java.lang.String type)
Create a new BagQuery object for the default query - search for all key fields of the given class.

BagQuery(BagQueryConfig bagQueryConfig, Model model, java.lang.String queryString, java.lang.String message, java.lang.String packageName, boolean matchesAreIssues)
Create a new BagQuery object.

Method Summary

java.lang.String	getMessage() Return the message that was passed to the constructor.
Query	getQuery(java.util.Collection bag, java.lang.String extraFieldValue) Return the Query that was passed to the constructor.
Query	getQueryForWildcards(java.util.Collection<java.lang.String> bag, java.lang.String extraFieldValue) Return a Query to fetch bag contents for wildcards.
boolean	matchesAreIssues() Return the flag passed to the constructor.
java.lang.String	toString()
void	traverseConstraint(Constraint con, java.util.Map<QueryEvaluable,ConstraintSet> nodes) Finds all BagConstraints in a Constraint, and places the QueryEvaluable and the containing ConstraintSet into the given Map.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BagQuery

public BagQuery(BagQueryConfig bagQueryConfig,
                Model model,
                java.lang.String queryString,
                java.lang.String message,
                java.lang.String packageName,
                boolean matchesAreIssues)

Create a new BagQuery object.

Parameters:

bagQueryConfig - the configuration to use

model - the Model for the query

queryString - the query IQL

message - the message from the bag-queries.xml describing this query

packageName - the package name

matchesAreIssues - true if matches for this bag query should be treated as issues (aka low quality matches)

BagQuery

public BagQuery(BagQueryConfig bagQueryConfig,
                Model model,
                java.util.Map classKeys,
                java.lang.String type)

Create a new BagQuery object for the default query - search for all key fields of the given class.

Parameters:

bagQueryConfig - the configuration to use

model - the Model for the query

classKeys - map of class key fields

type - the qualified class name of the type to build query for

Method Detail

getQuery

public Query getQuery(java.util.Collection bag,
                      java.lang.String extraFieldValue)
               throws java.lang.ClassNotFoundException

Return the Query that was passed to the constructor.

Parameters:

bag - the collection to use to constrain the query

extraFieldValue - the value used if any extra constraint is configured

Returns:

the Query

Throws:

java.lang.ClassNotFoundException - if class given by type not found

getQueryForWildcards

public Query getQueryForWildcards(java.util.Collection<java.lang.String> bag,
                                  java.lang.String extraFieldValue)
                           throws java.lang.ClassNotFoundException

Return a Query to fetch bag contents for wildcards.

Parameters:

bag - the Collection of strings to use to constrain the query

extraFieldValue - the value used if any extra constraint is configured

Returns:

the Query

Throws:

java.lang.ClassNotFoundException - if class specified by type not found

traverseConstraint

public void traverseConstraint(Constraint con,
                               java.util.Map<QueryEvaluable,ConstraintSet> nodes)

Finds all BagConstraints in a Constraint, and places the QueryEvaluable and the containing ConstraintSet into the given Map.

Parameters:

con - the Constraint to search

nodes - the Map to put results into

matchesAreIssues

public boolean matchesAreIssues()

Return the flag passed to the constructor.

Returns:

the matchesAreIssues flag

getMessage

public java.lang.String getMessage()

Return the message that was passed to the constructor.

Returns:

the message

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object