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| org.intermine.* |
|---|
| org.intermine.api.bag.BagOperations | ||
|---|---|---|
public static final java.lang.String |
INTERSECT |
"INTERSECT" |
public static final java.lang.String |
SUBTRACT |
"SUBTRACT" |
public static final java.lang.String |
UNION |
"UNION" |
| org.intermine.api.bag.BagQueryHelper | ||
|---|---|---|
public static final java.lang.String |
DEFAULT_MESSAGE |
"searching key fields" |
| org.intermine.api.bag.BagQueryResult | ||
|---|---|---|
public static final java.lang.String |
DUPLICATE |
"DUPLICATE" |
public static final java.lang.String |
OTHER |
"OTHER" |
public static final java.lang.String |
TYPE_CONVERTED |
"TYPE_CONVERTED" |
public static final java.lang.String |
WILDCARD |
"WILDCARD" |
| org.intermine.api.config.Constants | ||
|---|---|---|
public static final int |
BATCH_SIZE |
500 |
| org.intermine.api.results.WebResults | ||
|---|---|---|
public static final int |
BIG_BATCH_SIZE |
5000 |
| org.intermine.api.search.Scope | ||
|---|---|---|
public static final java.lang.String |
ALL |
"all" |
public static final java.lang.String |
GLOBAL |
"global" |
public static final java.lang.String |
USER |
"user" |
| org.intermine.api.tag.TagNames | ||
|---|---|---|
public static final java.lang.String |
IM_ASPECT_MISC |
"im:aspect:Miscellaneous" |
public static final java.lang.String |
IM_ASPECT_PREFIX |
"im:aspect:" |
public static final java.lang.String |
IM_CONVERTER |
"im:converter" |
public static final java.lang.String |
IM_FAVOURITE |
"im:favourite" |
public static final java.lang.String |
IM_HIDDEN |
"im:hidden" |
public static final java.lang.String |
IM_PREFIX |
"im:" |
public static final java.lang.String |
IM_PUBLIC |
"im:public" |
public static final java.lang.String |
IM_REPORT |
"im:report" |
public static final java.lang.String |
IM_SEARCH_RESULTS |
"im:searchresults" |
public static final java.lang.String |
IM_SUMMARY |
"im:summary" |
public static final java.lang.String |
SEPARATOR |
":" |
| org.intermine.api.tag.TagTypes | ||
|---|---|---|
public static final java.lang.String |
BAG |
"bag" |
public static final java.lang.String |
CLASS |
"class" |
public static final java.lang.String |
COLLECTION |
"collection" |
public static final java.lang.String |
REFERENCE |
"reference" |
public static final java.lang.String |
TEMPLATE |
"template" |
| org.intermine.bio.dataconversion.EntrezOrganismRetriever | ||
|---|---|---|
protected static final int |
BATCH_SIZE |
50 |
protected static final java.lang.String |
ESUMMARY_URL |
"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=taxonomy&retmode=xml&id=" |
| org.intermine.bio.dataconversion.EntrezPublicationsRetriever | ||
|---|---|---|
protected static final int |
BATCH_SIZE |
500 |
protected static final java.lang.String |
ESUMMARY_URL |
"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?tool=flymine&db=pubmed&id=" |
| org.intermine.bio.dataconversion.FlyBaseProcessor | ||
|---|---|---|
protected static final java.lang.String |
FLYBASE_MISCELLANEOUS_CV |
"FlyBase miscellaneous CV" |
protected static final java.lang.String |
FLYBASE_SO_CV_NAME |
"SO" |
| org.intermine.bio.dataconversion.GoConverter | ||
|---|---|---|
protected static final java.lang.String |
PROP_FILE |
"go-annotation_config.properties" |
| org.intermine.bio.dataconversion.InparanoidConverter | ||
|---|---|---|
protected static final java.lang.String |
PROP_FILE |
"inparanoid_config.properties" |
| org.intermine.bio.util.Constants | ||
|---|---|---|
public static final java.lang.String |
PRECOMPUTE_CATEGORY |
"precompute" |
| org.intermine.codegen.JavaModelOutput | ||
|---|---|---|
protected static final java.lang.String |
INDENT |
" " |
| org.intermine.dataloader.IntegrationWriterAbstractImpl | ||
|---|---|---|
protected static final int |
FROM_DB |
1 |
protected static final int |
SKELETON |
0 |
protected static final int |
SOURCE |
2 |
| org.intermine.metadata.FieldDescriptor | ||
|---|---|---|
public static final int |
M_N_RELATION |
4 |
public static final int |
N_ONE_RELATION |
3 |
public static final int |
NOT_RELATION |
0 |
public static final int |
ONE_N_RELATION |
2 |
public static final int |
ONE_ONE_RELATION |
1 |
| org.intermine.modelproduction.MetadataManager | ||
|---|---|---|
public static final java.lang.String |
AUTOCOMPLETE_INDEX |
"autocomplete" |
public static final java.lang.String |
CLASS_KEYS |
"class_keys" |
public static final java.lang.String |
KEY_DEFINITIONS |
"keyDefs" |
public static final java.lang.String |
METADATA_TABLE |
"intermine_metadata" |
public static final java.lang.String |
MISSING_TABLES |
"missingTables" |
public static final java.lang.String |
MODEL |
"model" |
public static final java.lang.String |
NO_NOTXML |
"noNotXml" |
public static final java.lang.String |
OS_FORMAT_VERSION |
"osversion" |
public static final java.lang.String |
OS_SUMMARY |
"objectStoreSummary" |
public static final java.lang.String |
PROFILE_FORMAT_VERSION |
"profileversion" |
public static final java.lang.String |
SEARCH_INDEX |
"search" |
public static final java.lang.String |
SEARCH_INDEX_DIRECTORY |
"search_directory" |
public static final java.lang.String |
TRUNCATED_CLASSES |
"truncatedClasses" |
| org.intermine.objectstore.intermine.NotXmlParser | ||
|---|---|---|
public static final java.lang.String |
DELIM |
"$_^" |
public static final java.lang.String |
ENCODED_DELIM |
"d" |
| org.intermine.objectstore.intermine.ObjectStoreInterMineImpl | ||
|---|---|---|
public static final java.lang.String |
BAGID_COLUMN |
"bagid" |
public static final java.lang.String |
BAGVAL_COLUMN |
"value" |
protected static final int |
CACHE_LARGEST_OBJECT |
5000000 |
public static final java.lang.String |
CLOB_TABLE_NAME |
"clob" |
public static final java.lang.String |
CLOBID_COLUMN |
"clobid" |
public static final java.lang.String |
CLOBPAGE_COLUMN |
"clobpage" |
public static final java.lang.String |
CLOBVAL_COLUMN |
"value" |
public static final java.lang.String |
INT_BAG_TABLE_NAME |
"osbag_int" |
protected static final int |
SEQUENCE_MULTIPLE |
1000000 |
public static final java.lang.String |
UNIQUE_INTEGER_SEQUENCE_NAME |
"objectstore_unique_integer" |
| org.intermine.objectstore.intermine.SqlGenerator | ||
|---|---|---|
protected static final int |
ID_ONLY |
2 |
public static final int |
MAX_BAG_INLINE_SIZE |
2 |
protected static final int |
NO_ALIASES_ALL_FIELDS |
3 |
protected static final int |
QUERY_FOR_GOFASTER |
6 |
protected static final int |
QUERY_FOR_PRECOMP |
4 |
protected static final int |
QUERY_NORMAL |
0 |
protected static final int |
QUERY_SUBQUERY_CONSTRAINT |
2 |
protected static final int |
QUERY_SUBQUERY_EXISTS |
5 |
protected static final int |
QUERY_SUBQUERY_FROM |
1 |
public static final int |
SAFENESS_ANTISAFE |
-1 |
public static final int |
SAFENESS_SAFE |
1 |
public static final int |
SAFENESS_UNSAFE |
0 |
| org.intermine.objectstore.intermine.TorqueModelOutput | ||
|---|---|---|
public static final int |
FORMAT_VERSION |
1 |
protected static final java.lang.String |
INDENT |
" " |
| org.intermine.objectstore.query.Clob | ||
|---|---|---|
public static final int |
CLOB_PAGE_SIZE |
7000 |
| org.intermine.objectstore.query.ObjectStoreBagCombination | ||
|---|---|---|
public static final int |
ALLBUTINTERSECT |
853915 |
public static final int |
EXCEPT |
281056 |
public static final int |
INTERSECT |
519552 |
public static final int |
UNION |
879234 |
| org.intermine.objectstore.query.PrefetchManager | ||
|---|---|---|
protected static final int |
LOADING |
3 |
| org.intermine.objectstore.query.QueryExpression | ||
|---|---|---|
public static final int |
ADD |
0 |
public static final int |
DIVIDE |
3 |
public static final int |
INDEX_OF |
5 |
public static final int |
LOWER |
6 |
public static final int |
MULTIPLY |
2 |
public static final int |
SUBSTRING |
4 |
public static final int |
SUBTRACT |
1 |
public static final int |
UPPER |
7 |
| org.intermine.objectstore.query.QueryFunction | ||
|---|---|---|
public static final int |
AVERAGE |
1 |
public static final int |
COUNT |
4 |
public static final int |
MAX |
3 |
public static final int |
MIN |
2 |
public static final int |
STDDEV |
5 |
public static final int |
SUM |
0 |
| org.intermine.objectstore.query.ResultsBatches | ||
|---|---|---|
public static final int |
DEFAULT_BATCH_SIZE |
1000 |
| org.intermine.objectstore.query.ResultsInfo | ||
|---|---|---|
public static final int |
AT_LEAST |
2 |
public static final int |
AT_MOST |
1 |
public static final int |
ESTIMATE |
3 |
public static final int |
SIZE |
0 |
| org.intermine.objectstore.query.UnknownTypeValue | ||
|---|---|---|
public static final int |
TYPE_BOOLEAN |
1 |
public static final int |
TYPE_NUMBER |
0 |
public static final int |
TYPE_STRING |
2 |
| org.intermine.pathquery.PathQuery | ||
|---|---|---|
public static final int |
USERPROFILE_VERSION |
2 |
| org.intermine.sql.precompute.BestQueryExplainer | ||
|---|---|---|
protected static final int |
ALWAYS_EXPLAIN_TABLES |
3 |
protected static final int |
NEVER_EXPLAIN_TABLES |
8 |
| org.intermine.sql.precompute.OptimiserCache | ||
|---|---|---|
public static final int |
EXPIRE_INTERVAL |
100 |
public static final int |
MAX_LINESETS |
1000 |
| org.intermine.sql.precompute.PrecomputedTable | ||
|---|---|---|
public static final java.lang.String |
ORDERBY_FIELD |
"orderby_field" |
| org.intermine.sql.precompute.PrecomputedTableManager | ||
|---|---|---|
protected static final java.lang.String |
TABLE_INDEX |
"precompute_index" |
| org.intermine.sql.precompute.QueryOptimiserContext | ||
|---|---|---|
public static final java.lang.String |
MODE_NORMAL |
"MODE_NORMAL" |
public static final java.lang.String |
MODE_VERBOSE |
"MODE_VERBOSE" |
public static final java.lang.String |
MODE_VERBOSE_LIST |
"MODE_VERBOSE_LIST" |
public static final java.lang.String |
MODE_VERBOSE_SUMMARY |
"MODE_VERBOSE_SUMMARY" |
| org.intermine.sql.query.AbstractConstraint | ||
|---|---|---|
public static final int |
BOTH_FALSE |
1 |
public static final int |
BOTH_TRUE |
8 |
public static final int |
EQUAL |
9 |
public static final int |
EXCLUDES |
7 |
public static final int |
IMPLIED_BY |
13 |
public static final int |
IMPLIES |
11 |
public static final int |
INDEPENDENT |
15 |
public static final int |
LEFT_FALSE |
3 |
public static final int |
LEFT_FALSE_RIGHT_TRUE |
2 |
public static final int |
LEFT_TRUE |
12 |
public static final int |
LEFT_TRUE_RIGHT_FALSE |
4 |
public static final int |
OPPOSITE |
6 |
public static final int |
OR |
14 |
public static final int |
RIGHT_FALSE |
5 |
public static final int |
RIGHT_TRUE |
10 |
| org.intermine.sql.query.AbstractValue | ||
|---|---|---|
public static final int |
EQUAL |
0 |
public static final int |
GREATER |
2 |
public static final int |
INCOMPARABLE |
4 |
public static final int |
LESS |
1 |
public static final int |
NOT_EQUAL |
3 |
| org.intermine.sql.query.Constraint | ||
|---|---|---|
public static final int |
EQ |
1 |
public static final int |
GORNULL |
4 |
public static final int |
LIKE |
3 |
public static final int |
LT |
2 |
| org.intermine.sql.query.Function | ||
|---|---|---|
public static final int |
AVG |
5 |
public static final int |
COALESCE |
15 |
public static final int |
COUNT |
1 |
public static final int |
DIVIDE |
9 |
public static final int |
LOWER |
16 |
public static final int |
MAX |
2 |
public static final int |
MIN |
3 |
public static final int |
MINUS |
7 |
public static final int |
MODULO |
11 |
public static final int |
MULTIPLY |
8 |
public static final int |
PLUS |
6 |
public static final int |
POWER |
10 |
public static final int |
STDDEV |
18 |
public static final int |
STRPOS |
13 |
public static final int |
SUBSTR |
14 |
public static final int |
SUM |
4 |
public static final int |
TYPECAST |
12 |
public static final int |
UPPER |
17 |
| org.intermine.task.AcceptanceTestTask | ||
|---|---|---|
public static final java.lang.String |
TRAC_TICKET_URL_PREFIX |
"http://intrac.flymine.org/ticket/" |
| org.intermine.task.BuildDbTask | ||
|---|---|---|
protected static final java.lang.String |
SERIAL_SEQUENCE_NAME |
"serial" |
| org.intermine.task.PrecomputeTask | ||
|---|---|---|
protected static final int |
THREAD_COUNT |
4 |
| org.intermine.web.ProfileManagerBinding | ||
|---|---|---|
public static final java.lang.String |
ZERO_PROFILE_VERSION |
"0" |
| org.intermine.web.logic.Constants | ||
|---|---|---|
public static final java.lang.String |
ASPECTS |
"ASPECTS" |
public static final java.lang.String |
AUTO_COMPLETER |
"AUTO_COMPLETER" |
public static final java.lang.String |
CATEGORIES |
"CATEGORIES" |
public static final java.lang.String |
DEFAULT_OPERATOR |
"DEFAULT_OPERATOR" |
public static final int |
DEFAULT_TABLE_SIZE |
25 |
public static final java.lang.String |
DISPLAY_OBJECT_CACHE |
"DISPLAY_OBJECT_CACHE" |
public static final java.lang.String |
EDITING_TEMPLATE |
"EDITING_TEMPLATE" |
public static final java.lang.String |
EMPTY_FIELD_MAP |
"EMPTY_FIELD_MAP" |
public static final java.lang.String |
ERRORS |
"ERRORS" |
public static final java.lang.String |
GLOBAL_CACHE |
"GLOBAL_CACHE" |
public static final java.lang.String |
GLOBAL_SEARCH_REPOSITORY |
"GLOBAL_SEARCH_REPOSITORY" |
public static final java.lang.String |
GRAPH_CACHE |
"GRAPH_CACHE" |
public static final java.lang.String |
INLINE_TABLE_SIZE |
"inline.table.size" |
public static final java.lang.String |
INTERMINE_API |
"INTERMINE_API" |
public static final java.lang.String |
IS_SUPERUSER |
"IS_SUPERUSER" |
public static final java.lang.String |
KEYLESS_CLASSES_MAP |
"KEYLESS_CLASSES_MAP" |
public static final java.lang.String |
LEAF_DESCRIPTORS_MAP |
"LEAF_DESCRIPTORS_MAP" |
public static final java.lang.String |
LOOKUP_MSG |
"LOOKUP_MSG" |
public static final int |
MAX_NOT_LOGGED_BAG_SIZE |
500 |
public static final java.lang.String |
MESSAGES |
"MESSAGES" |
public static final java.lang.String |
MYMINE_PAGE |
"MYMINE_PAGE" |
public static final java.lang.String |
NEW_TEMPLATE |
"NEW_TEMPLATE" |
public static final int |
POLL_REFRESH_SECONDS |
2 |
public static final java.lang.String |
PORTAL_MSG |
"PORTAL_MSG" |
public static final java.lang.String |
PREV_TEMPLATE_NAME |
"PREV_TEMPLATE_NAME" |
public static final java.lang.String |
PROFILE |
"PROFILE" |
public static final java.lang.String |
QUERY |
"QUERY" |
public static final int |
QUERY_TIMEOUT_SECONDS |
20 |
public static final java.lang.String |
RESULTS_TABLE_SIZE |
"RESULTS_TABLE_SIZE" |
public static final java.lang.String |
RUNNING_QUERIES |
"RUNNING_QUERIES" |
public static final java.lang.String |
SUBCLASSES |
"SUBCLASSES" |
public static final java.lang.String |
TABLE_MAP |
"TABLE_MAP" |
public static final java.lang.String |
WEB_PROPERTIES |
"WEB_PROPERTIES" |
public static final int |
WEB_SERVICE_VERSION |
2 |
public static final java.lang.String |
WEB_STATE |
"WEB_STATE" |
public static final java.lang.String |
WEBCONFIG |
"WEBCONFIG" |
| org.intermine.web.logic.bag.BagHelper | ||
|---|---|---|
public static final java.lang.String |
BAG_NAME_PREFIX |
"bag" |
| org.intermine.web.logic.export.Exporter | ||
|---|---|---|
public static final java.lang.String |
UNIX_SEPARATOR |
"\n" |
public static final java.lang.String |
WINDOWS_SEPARATOR |
"\r\n" |
| org.intermine.web.logic.help.HintManager | ||
|---|---|---|
public static final int |
MAX_HINT_DISPLAY |
3 |
| org.intermine.web.search.KeywordSearch | ||
|---|---|---|
public static final int |
MAX_HITS |
500 |
public static final int |
PER_PAGE |
100 |
| org.intermine.web.struts.SaveBagAction | ||
|---|---|---|
public static final int |
BIG_BATCH_SIZE |
10000 |
| org.intermine.web.struts.TemplateAction | ||
|---|---|---|
public static final java.lang.String |
SKIP_BUILDER_PARAMETER |
"skipBuilder" |
public static final java.lang.String |
TEMPLATE_ACTION_PATH |
"templateAction.do" |
| org.intermine.web.task.PrecomputeTemplatesTask | ||
|---|---|---|
public static final java.lang.String |
PRECOMPUTE_CATEGORY_TEMPLATE |
"template" |
| org.intermine.webservice.server.WebService | ||
|---|---|---|
public static final int |
CSV_FORMAT |
3 |
public static final int |
HTML_FORMAT |
2 |
public static final int |
TSV_FORMAT |
1 |
public static final int |
XML_FORMAT |
0 |
| org.intermine.webservice.server.WebServiceConstants | ||
|---|---|---|
public static final java.lang.String |
MODULE_NAME |
"service" |
public static final java.lang.String |
SERVICE_FAILED_MSG |
"Service failed. Please contact support." |
| org.intermine.webservice.server.lists.ListsRequestParser | ||
|---|---|---|
public static final java.lang.String |
TYPE_PARAMETER |
"type" |
| org.intermine.webservice.server.output.Output | ||
|---|---|---|
public static final int |
SC_BAD_REQUEST |
400 |
public static final int |
SC_FORBIDDEN |
403 |
public static final int |
SC_INTERNAL_SERVER_ERROR |
500 |
public static final int |
SC_NO_CONTENT |
204 |
public static final int |
SC_NOT_FOUND |
404 |
public static final int |
SC_OK |
200 |
| org.intermine.webservice.server.query.result.QueryResultRequestParser | ||
|---|---|---|
public static final java.lang.String |
COMPUTE_TOTAL_COUNT_PARAMETER |
"tcount" |
public static final java.lang.String |
LAYOUT_PARAMETER |
"layout" |
public static final java.lang.String |
QUERY_PARAMETER |
"query" |
| org.intermine.webservice.server.query.result.WebServiceRequestParser | ||
|---|---|---|
public static final java.lang.String |
FORMAT_PARAMETER_CSV |
"csv" |
public static final java.lang.String |
FORMAT_PARAMETER_HTML |
"html" |
public static final java.lang.String |
FORMAT_PARAMETER_TAB |
"tab" |
public static final java.lang.String |
FORMAT_PARAMETER_XML |
"xml" |
public static final java.lang.String |
LIMIT_PARAMETER |
"size" |
public static final java.lang.String |
OUTPUT_PARAMETER |
"format" |
public static final java.lang.String |
START_PARAMETER |
"start" |
| org.intermine.webservice.server.template.result.TemplateResultLinkGenerator | ||
|---|---|---|
public static final int |
DEFAULT_RESULT_SIZE |
10 |
| org.intermine.webservice.server.template.result.TemplateResultService | ||
|---|---|---|
public static final java.lang.String |
NAME_PARAMETER |
"name" |
public static final java.lang.String |
TYPE_PARAMETER |
"type" |
|
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