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Data Categories

Select a category to see more information about the data sets included. Each category includes associated templates and lists.
Genomics Comparative Genomics
Proteins Protein Structure
Interactions Gene Ontology
Gene Expression Transcriptional Regulation
Phenotypes Pathways
Disease Literature
Resources

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   After querying the data, you can review a summary for each results column.  Read more ...

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Templates

Templates are predefined queries, each has a simple form and a description. You can edit templates in the QueryBuilder, if you log in you can create new templates yourself.
Example templates (191 total):

Lists

You can run queries on whole lists of data. Create lists from the results of a query or by uploading identifiers. Click on a list to view graphs and summaries in a list analysis page, if you log in you can save lists permanently.


Example lists (25 total):
  • PL sperm_proteome_genes (384 Genes)
    Genes encoding the D. melanogaster sperm proteome (Source: Dorus et al 2006 - PubMed: 17099233).
  • PL classI (1520 Genes)
    Maternal genes - genes encoding transcripts that start with a high relative transcript level, which subsequently decreases during embryogenesis (Source: Hooper et al 2007 - PubMed: 17224916).



Query Builder

You can use the flexible query interface to construct your own data mining queries. A good way to start is by editing an existing template.


Start a query from:  Gene, Protein





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